Drag Racing

Abstracts for the COMULIS Conference, September 2021


Index

Invited speakers

Name                      Title
Aswendt,
Markus

Reactive gliosis is a critical pathophysiological component in normalization of functional connectivity after stroke

Eliceiri,
Kevin

Multiscale Imaging of collagen topology in cancer invasion and progression

Kerckhofs,
Greet

Contrast-enhanced ex vivo microCT imaging for virtual 3D histology of biological tissues

Kollmannsberger,
Philip

Correlation of Light- and Electron Microscopic Images with Convolutional Neural Networks

Masson,
Jean-Baptiste

Graph neural network approach to anomalous random walks characterisation: application to unsupervised membrane protein dynamics analysis

Müller,
Ralph

Multiscale LivE imaging of bone remodeling and regeneration

Sartori-Rupp,
Anna

Correlative cryo-microscopy: a 3D glance into intact cells with nanometer resolution

Schwab,
Yannick

From gene expression atlases to ultrastructure: the contribution of multimodal imaging to study specific cell types in multicellular organisms

Tischer,
Christian

MOBIE: a free and open-source platform for integration and could based sharing of multi-modal correlative big image data

Tomaszewski,
Michal R.

Co-registration of optoacoustic tomography and magnetic resonance imaging data from murine tumour models

Weigel,
Aubrey

Whole cell organelle segmentation in volume electron microscopy


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Contributed talks

Correlative Microscopy – Light and Electron Microscopy

Name                  Title
de Lima,
Juliana Aristéia

Correlative light and scanning electron microscopy to shed light on tyre and road wear particle emissions in the environment

Pujal,
Silvia

Correlative super resolution and electron microscopy methods for nanomedicine

Öfverstedt,
Johan

Fast Computation of Mutual Information with Application to Global Multimodal Image Alignment of Micrographs

Novel Correlative Multimodal Imaging Pipelines

Name                  Title
Cao,
Jianhua

Correlative multimodal imaging of the in situ metabolism of early-stage atherosclerosis in LDLR deficient mice

Taubitz,
Tatjana

Ion based multimodal in situ imaging in biological systems: introducing the npSCOPE

Wetzer,
Elisabeth

Registration of Multimodal Microscopy Images using CoMIR – learned structural image representations

Preclinical hybrid imaging

Name                  Title
Jolic,
Martina

Bone Beyond Borders – Monetite-Based Calcium Phosphate Induces Bone Formation Outside The Skeletal Envelope In An Ovis Aries Occipital Bone Model

Rouchota,
Maritina

A preclinical platform that combines dynamic scintigraphy, SPECT and CT imaging towards bone defect diagnosis and therapy assessment

Srinivas,
Mangala

Muldimodal imaging for cell tracking: Bench to Bedside (and back)

Imaging across scales

Name                  Title
Bischof,
Johanna

Euro-BioImaging can support your research with access to the best imaging tools

Lu,
Jiahao

Image-to-Image Translation in Multimodal Image Registration: How Well Does It Work?

Paul-Gilloteaux,
Perrine

EcClemv2: A new version of a flexible software for correlative workflows


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Workshops

Name                  Company     Title
Lang,
Marion
ZEISS
ZEISS Correlative Cryo Workflow – from image acquisition to visualization & analysis

Lau,
Katherine
DELMIC
Providing in situ cryo-CLEM capabilities for any cryo-FIB/SEM systems – improve correlation accuracy and cryo-electron tomography sample yield

Rigort,
Alexander
Thermo Fisher
Cryo-CLEM inside the Aquilos Cryo-FIB using a new integrated fluorescence light microscope

Schweikhard,
Volker
Leica
From CLEM to chemical contrast


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Posters

Correlative Microscopy Light and Electron Microscopy

Name                  Title
Fernández-Monreal,
Mónica

Cryo-SuperResolution implementation for Cryo-CLEM workflows

Lefort,
Claire

An optical image of viral particles with computational multiphoton microscopy

Nikolova,
Biliana

Fluorescence based autophagy imaging and in vitro study of possible antitumor effect after Rhamnolipid treatment

Novel Correlative Multimodal Imaging Pipelines.

Name                  Title
Becquart,
Cécile

Studying the subcellular distribution and concentration of antisense oligonucleotides by correlative NanoSIMS and electron microscopy

Cayuela,
Ana

Cell-Type Analyzer: A Fiji/ImageJ plugin for detection, quantification and classification of fluorescent labeled single-cell according to user customization

Fowler,
Donald A.

Optical Projection Tomography and Light-Sheet Microscopy Combined: Multimodal Mesoscopic Imaging

Nicolás-Sáenz ,
Laura

Correlation of optical microscopy and ion beam data for trace element spatial localization in TB lesions

Preclinical hybrid imaging.

Name                  Title
Bartsch,
Silvester J.

Molecular subtyping of breast cancer via intravoxel incoherent motion (IVIM)- diffusion weighted imaging (DWI) of the hypoxic tumor microenvironment

Imaging across scales.

Name                  Title
Konstantinopoulou,
Eleni

Investigating tuberculosis pathology in the human lung with 3D X-ray Histology; a correlative imaging approach

Pevna,
Viktoria

Effect of PBM on rotenone-damaged ultrastructure of glioma cells

Srinivas,
Mangala

Unusual nanoparticles for multiscale imaging in personalised medicine: From bench to bedside


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All in alphabetical order

Name                  Title
Aswendt,
Markus

Reactive gliosis is a critical pathophysiological component in normalization of functional connectivity after stroke

Bartsch,
Silvester J.

Molecular subtyping of breast cancer via intravoxel incoherent motion (IVIM)- diffusion weighted imaging (DWI) of the hypoxic tumor microenvironment

Becquart,
Cécile

Studying the subcellular distribution and concentration of antisense oligonucleotides by correlative NanoSIMS and electron microscopy

Bischof,
Johanna

Euro-BioImaging can support your research with access to the best imaging tools

Cao,
Jianhua

Correlative multimodal imaging of the in situ metabolism of early-stage atherosclerosis in LDLR deficient mice

Cayuela,
Ana

Cell-Type Analyzer: A Fiji/ImageJ plugin for detection, quantification and classification of fluorescent labeled single-cell according to user customization

de Lima,
Juliana Aristéia

Correlative light and scanning electron microscopy to shed light on tyre and road wear particle emissions in the environment

Eliceiri,
Kevin

Multiscale Imaging of collagen topology in cancer invasion and progression

Fernández-Monreal,
Mónica

Cryo-SuperResolution implementation for Cryo-CLEM workflows

Fowler,
Donald A.

Optical Projection Tomography and Light-Sheet Microscopy Combined: Multimodal Mesoscopic Imaging

Jolic,
Martina

Bone Beyond Borders – Monetite-Based Calcium Phosphate Induces Bone Formation Outside The Skeletal Envelope In An Ovis Aries Occipital Bone Model

Kerckhofs,
Greet

Contrast-enhanced ex vivo microCT imaging for virtual 3D histology of biological tissues

Kollmannsberger,
Philip

Correlation of Light- and Electron Microscopic Images with Convolutional Neural Networks

Konstantinopoulou,
Eleni

Investigating tuberculosis pathology in the human lung with 3D X-ray Histology; a correlative imaging approach

Lang,
Marion

ZEISS Correlative Cryo Workflow – from image acquisition to visualization & analysis

Lau,
Katherine

Providing in situ cryo-CLEM capabilities for any cryo-FIB/SEM systems – improve correlation accuracy and cryo-electron tomography sample yield

Lefort,
Claire

An optical image of viral particles with computational multiphoton microscopy

Lu,
Jiahao

Image-to-Image Translation in Multimodal Image Registration: How Well Does It Work?

Masson,
Jean-Baptiste

Graph neural network approach to anomalous random walks characterisation: application to unsupervised membrane protein dynamics analysis

Müller,
Ralph

Multiscale LivE imaging of bone remodeling and regeneration

Nicolás-Sáenz ,
Laura

Correlation of optical microscopy and ion beam data for trace element spatial localization in TB lesions

Nikolova,
Biliana

Fluorescence based autophagy imaging and in vitro study of possible antitumor effect after Rhamnolipid treatment

Paul-Gilloteaux,
Perrine

EcClemv2: A new version of a flexible software for correlative workflows

Pevna,
Viktoria

Effect of PBM on rotenone-damaged ultrastructure of glioma cells

Pujal,
Silvia

Correlative super resolution and electron microscopy methods for nanomedicine

Rigort,
Alexander

Cryo-CLEM inside the Aquilos Cryo-FIB using a new integrated fluorescence light microscope

Rouchota,
Maritina

A preclinical platform that combines dynamic scintigraphy, SPECT and CT imaging towards bone defect diagnosis and therapy assessment

Sartori-Rupp,
Anna

Correlative cryo-microscopy: a 3D glance into intact cells with nanometer resolution

Schwab,
Yannick

From gene expression atlases to ultrastructure: the contribution of multimodal imaging to study specific cell types in multicellular organisms

Schweikhard,
Volker

From CLEM to chemical contrast

Srinivas,
Mangala

Muldimodal imaging for cell tracking: Bench to Bedside (and back)

Srinivas,
Mangala

Unusual nanoparticles for multiscale imaging in personalised medicine: From bench to bedside

Taubitz,
Tatjana

Ion based multimodal in situ imaging in biological systems: introducing the npSCOPE

Tischer,
Christian

MOBIE: a free and open-source platform for integration and could based sharing of multi-modal correlative big image data

Tomaszewski,
Michal R.

Co-registration of optoacoustic tomography and magnetic resonance imaging data from murine tumour models

Weigel,
Aubrey

Whole cell organelle segmentation in volume electron microscopy

Wetzer,
Elisabeth

Registration of Multimodal Microscopy Images using CoMIR – learned structural image representations

Öfverstedt,
Johan

Fast Computation of Mutual Information with Application to Global Multimodal Image Alignment of Micrographs

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